| The genetic landscape of a cell M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ... science 327 (5964), 425-431, 2010 | 2543 | 2010 |
| Classification of intrinsically disordered regions and proteins R Van Der Lee, M Buljan, B Lang, RJ Weatheritt, GW Daughdrill, ... Chemical reviews 114 (13), 6589-6631, 2014 | 2236 | 2014 |
| Paired-end mapping reveals extensive structural variation in the human genome JO Korbel, AE Urban, JP Affourtit, B Godwin, F Grubert, JF Simons, ... Science 318 (5849), 420-426, 2007 | 1567 | 2007 |
| The evolutionary landscape of alternative splicing in vertebrate species NL Barbosa-Morais, M Irimia, Q Pan, HY Xiong, S Gueroussov, LJ Lee, ... Science 338 (6114), 1587-1593, 2012 | 1187 | 2012 |
| The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics H Yu, PM Kim, E Sprecher, V Trifonov, M Gerstein PLoS computational biology 3 (4), e59, 2007 | 1161 | 2007 |
| Relating three-dimensional structures to protein networks provides evolutionary insights PM Kim, LJ Lu, Y Xia, MB Gerstein Science 314 (5807), 1938-1941, 2006 | 561 | 2006 |
| Tissue-specific alternative splicing remodels protein-protein interaction networks JD Ellis, M Barrios-Rodiles, R Colak, M Irimia, TH Kim, JA Calarco, ... Molecular cell 46 (6), 884-892, 2012 | 479 | 2012 |
| Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs J Mok, PM Kim, HYK Lam, S Piccirillo, X Zhou, GR Jeschke, DL Sheridan, ... Science signaling 3 (109), ra12-ra12, 2010 | 417 | 2010 |
| C2H2 zinc finger proteins greatly expand the human regulatory lexicon HS Najafabadi, S Mnaimneh, FW Schmitges, M Garton, KN Lam, A Yang, ... Nature biotechnology 33 (5), 555-562, 2015 | 380 | 2015 |
| Subsystem identification through dimensionality reduction of large-scale gene expression data PM Kim, B Tidor Genome research 13 (7), 1706-1718, 2003 | 323 | 2003 |
| Fast and flexible protein design using deep graph neural networks A Strokach, D Becerra, C Corbi-Verge, A Perez-Riba, PM Kim Cell systems 11 (4), 402-411. e4, 2020 | 283 | 2020 |
| The role of disorder in interaction networks: a structural analysis PM Kim, A Sboner, Y Xia, M Gerstein Molecular systems biology 4 (1), 179, 2008 | 271 | 2008 |
| Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library HYK Lam, XJ Mu, AM Stütz, A Tanzer, PD Cayting, M Snyder, PM Kim, ... Nature biotechnology 28 (1), 47-55, 2010 | 261 | 2010 |
| Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins R Tonikian, X Xin, CP Toret, D Gfeller, C Landgraf, S Panni, S Paoluzi, ... PLoS biology 7 (10), e1000218, 2009 | 221 | 2009 |
| Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history PM Kim, HYK Lam, AE Urban, JO Korbel, J Affourtit, F Grubert, X Chen, ... Genome research 18 (12), 1865-1874, 2008 | 189 | 2008 |
| Positive selection at the protein network periphery: evaluation in terms of structural constraints and cellular context PM Kim, JO Korbel, MB Gerstein Proceedings of the National Academy of Sciences 104 (51), 20274-20279, 2007 | 174 | 2007 |
| Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes Y Ivarsson, R Arnold, M McLaughlin, S Nim, R Joshi, D Ray, B Liu, J Teyra, ... Proceedings of the National Academy of Sciences 111 (7), 2542-2547, 2014 | 170 | 2014 |
| Bringing order to protein disorder through comparative genomics and genetic interactions J Bellay, S Han, M Michaut, TH Kim, M Costanzo, BJ Andrews, C Boone, ... Genome biology 12, 1-15, 2011 | 170 | 2011 |
| A systematic approach to identify novel cancer drug targets using machine learning, inhibitor design and high-throughput screening J Jeon, S Nim, J Teyra, A Datti, JL Wrana, SS Sidhu, J Moffat, PM Kim Genome medicine 6, 1-18, 2014 | 169 | 2014 |
| Coevolution of PDZ domain–ligand interactions analyzed by high-throughput phage display and deep sequencing A Ernst, D Gfeller, Z Kan, S Seshagiri, PM Kim, GD Bader, SS Sidhu Molecular BioSystems 6 (10), 1782-1790, 2010 | 156 | 2010 |
Mark GersteinProfessor of Biomedical Informatics, Yale UniversityVerified email at yale.edu
