| Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 6308 | 2015 |
| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1443 | 2020 |
| Human body epigenome maps reveal noncanonical DNA methylation variation MD Schultz, Y He, JW Whitaker, M Hariharan, EA Mukamel, D Leung, ... Nature 523 (7559), 212-216, 2015 | 695 | 2015 |
| Epigenomic diversity in a global collection of Arabidopsis thaliana accessions T Kawakatsu, SC Huang, F Jupe, E Sasaki, RJ Schmitz, MA Urich, ... Cell 166 (2), 492-505, 2016 | 678 | 2016 |
| Molecular criteria for defining the naive human pluripotent state TW Theunissen, M Friedli, Y He, E Planet, RC O’Neil, S Markoulaki, ... Cell stem cell 19 (4), 502-515, 2016 | 531 | 2016 |
| Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex C Luo, CL Keown, L Kurihara, J Zhou, Y He, J Li, R Castanon, J Lucero, ... Science 357 (6351), 600-604, 2017 | 514 | 2017 |
| Abnormalities in human pluripotent cells due to reprogramming mechanisms H Ma, R Morey, RC O'Neil, Y He, B Daughtry, MD Schultz, M Hariharan, ... Nature 511 (7508), 177-183, 2014 | 394 | 2014 |
| Characterization of Greater Middle Eastern genetic variation for enhanced disease gene discovery EM Scott, A Halees, Y Itan, EG Spencer, Y He, MA Azab, SB Gabriel, ... Nature genetics 48 (9), 1071-1076, 2016 | 376 | 2016 |
| An atlas of dynamic chromatin landscapes in mouse fetal development DU Gorkin, I Barozzi, Y Zhao, Y Zhang, H Huang, AY Lee, B Li, J Chiou, ... Nature 583 (7818), 744-751, 2020 | 331* | 2020 |
| Non-CG methylation in the human genome Y He, JR Ecker Annual review of genomics and human genetics 16 (1), 55-77, 2015 | 282 | 2015 |
| Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population RJ Schmitz, Y He, O Valdés-López, SM Khan, T Joshi, MA Urich, JR Nery, ... Genome research 23 (10), 1663-1674, 2013 | 281 | 2013 |
| Minimal residual disease detection using a plasma-only circulating tumor DNA assay in patients with colorectal cancer AR Parikh, EE Van Seventer, G Siravegna, AV Hartwig, A Jaimovich, Y He, ... Clinical Cancer Research 27 (20), 5586-5594, 2021 | 273 | 2021 |
| An alternative pluripotent state confers interspecies chimaeric competency J Wu, D Okamura, M Li, K Suzuki, C Luo, L Ma, Y He, Z Li, C Benner, ... Nature 521 (7552), 316-321, 2015 | 272 | 2015 |
| The developmental potential of iPSCs is greatly influenced by reprogramming factor selection Y Buganim, S Markoulaki, N Van Wietmarschen, H Hoke, T Wu, K Ganz, ... Cell stem cell 15 (3), 295-309, 2014 | 194 | 2014 |
| Proteogenomic database construction driven from large scale RNA-seq data S Woo, SW Cha, G Merrihew, Y He, N Castellana, C Guest, M MacCoss, ... Journal of proteome research 13 (1), 21-28, 2014 | 136 | 2014 |
| Spatiotemporal DNA methylome dynamics of the developing mouse fetus Y He, M Hariharan, DU Gorkin, DE Dickel, C Luo, RG Castanon, JR Nery, ... Nature 583 (7818), 752-759, 2020 | 112 | 2020 |
| An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays NE Castellana, Z Shen, Y He, JW Walley, CJ Cassidy, SP Briggs, V Bafna Molecular & Cellular Proteomics 13 (1), 157-167, 2014 | 99 | 2014 |
| PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants BC Willige, M Zander, CY Yoo, A Phan, RM Garza, SA Wanamaker, Y He, ... Nature genetics 53 (7), 955-961, 2021 | 96 | 2021 |
| Functional human oocytes generated by transfer of polar body genomes H Ma, RC O’Neil, NM Gutierrez, M Hariharan, ZZ Zhang, Y He, ... Cell stem cell 20 (1), 112-119, 2017 | 95 | 2017 |
| Improved regulatory element prediction based on tissue-specific local epigenomic signatures Y He, DU Gorkin, DE Dickel, JR Nery, RG Castanon, AY Lee, Y Shen, ... Proceedings of the National Academy of Sciences 114 (9), E1633-E1640, 2017 | 80 | 2017 |
Joseph R. EckerHoward Hughes Medical Institute and The Salk Institute for Biological StudiesVerified email at Salk.edu
