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simon hubbard
simon hubbard
Professor of Computational Biology, University of Manchester
Verified email at manchester.ac.uk
Title
Cited by
Cited by
Year
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ...
Nature 432 (7018), 695-716, 2004
29652004
Naccess
SJ Hubbard, JM Thornton
Computer Program, Department of Biochemistry and Molecular Biology …, 1993
2525*1993
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
Genome sequence of red jungle fowl: Washington University School of Medicine ...
Nature 432 (7018), 717-722, 2004
6262004
The structural aspects of limited proteolysis of native proteins
SJ Hubbard
Biochimica et Biophysica Acta (BBA)-Protein Structure and Molecular …, 1998
5231998
Global translational responses to oxidative stress impact upon multiple levels of protein synthesis
D Shenton, JB Smirnova, JN Selley, K Carroll, SJ Hubbard, GD Pavitt, ...
Journal of Biological Chemistry 281 (39), 29011-29021, 2006
4742006
Molecular recognition: conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors
SJ Hubbard, SF Campbell, JM Thornton
Journal of molecular biology 220 (2), 507-530, 1991
4511991
A comprehensive collection of chicken cDNAs
PE Boardman, J Sanz-Ezquerro, IM Overton, DW Burt, E Bosch, WT Fong, ...
Current biology 12 (22), 1965-1969, 2002
3942002
A systematic approach to modeling, capturing, and disseminating proteomics experimental data
CF Taylor, NW Paton, KL Garwood, PD Kirby, DA Stead, Z Yin, ...
Nature biotechnology 21 (3), 247-254, 2003
3142003
Modeling studies of the change in conformation required for cleavage of limited proteolytic sites
SJ Hubbard, F Eisenmenger, JM Thornton
Protein Science 3 (5), 757-768, 1994
2821994
Intramolecular cavities in globular proteins
SJ Hubbard, KH Gross, P Argos
Protein Engineering, Design and Selection 7 (5), 613-626, 1994
2331994
Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics
JA Siepen, EJ Keevil, D Knight, SJ Hubbard
Journal of proteome research 6 (1), 399-408, 2007
2242007
The mzIdentML data standard for mass spectrometry-based proteomics results
AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ...
Molecular & Cellular Proteomics 11 (7), M111. 014381-1-M111. 014381-10, 2012
2222012
Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis
DM Soanes, I Alam, M Cornell, HM Wong, C Hedeler, NW Paton, ...
PLoS One 3 (6), e2300, 2008
2212008
The chicken as a model for large-scale analysis of vertebrate gene function
WRA Brown, SJ Hubbard, C Tickle, SA Wilson
Nature Reviews Genetics 4 (2), 87-98, 2003
2112003
Differential expression of ion channel transcripts in atrial muscle and sinoatrial node in rabbit
JO Tellez, H Dobrzynski, ID Greener, GM Graham, E Laing, H Honjo, ...
Circulation research 99 (12), 1384-1393, 2006
2052006
Cavities and packing at protein interfaces
SJ Hubbard, P Argos
Protein Science 3 (12), 2194-2206, 1994
1871994
BioMart Central Portal: an open database network for the biological community
JM Guberman, J Ai, O Arnaiz, J Baran, A Blake, R Baldock, C Chelala, ...
Database 2011, bar041, 2011
1802011
Conceptual modelling of genomic information
NW Paton, SA Khan, A Hayes, F Moussouni, A Brass, K Eilbeck, ...
Bioinformatics 16 (6), 548-557, 2000
1712000
CONSeQuence: prediction of reference peptides for absolute quantitative proteomics using consensus machine learning approaches
CE Eyers, C Lawless, DC Wedge, KW Lau, SJ Gaskell, SJ Hubbard
Molecular & Cellular Proteomics 10 (11), 2011
1532011
Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures.
SJ Hubbard, RJ Beynon, JM Thornton
Protein engineering 11 (5), 349-359, 1998
1521998
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