| Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists A Kohler, A Kuo, LG Nagy, E Morin, KW Barry, F Buscot, B Canbäck, ... Nature genetics 47 (4), 410-415, 2015 | 1023 | 2015 |
| An integrated pipeline for de novo assembly of microbial genomes A Tritt, JA Eisen, MT Facciotti, AE Darling Public Library of Science 7 (9), e42304, 2012 | 497 | 2012 |
| Comparative genomics of early-diverging mushroom-forming fungi provides insights into the origins of lignocellulose decay capabilities LG Nagy, R Riley, A Tritt, C Adam, C Daum, D Floudas, H Sun, JS Yadav, ... Molecular biology and evolution 33 (4), 959-970, 2016 | 253 | 2016 |
| 101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ... Studies in mycology 96 (1), 141-153, 2020 | 196 | 2020 |
| Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii D Floudas, BW Held, R Riley, LG Nagy, G Koehler, AS Ransdell, ... Fungal Genetics and Biology 76, 78-92, 2015 | 192 | 2015 |
| Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum M Peter, A Kohler, RA Ohm, A Kuo, J Krützmann, E Morin, M Arend, ... Nature communications 7 (1), 12662, 2016 | 160 | 2016 |
| Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response EA Becker, PM Seitzer, A Tritt, D Larsen, M Krusor, AI Yao, D Wu, ... PLoS genetics 10 (11), e1004784, 2014 | 155 | 2014 |
| Mauve assembly metrics AE Darling, A Tritt, JA Eisen, MT Facciotti Bioinformatics 27 (19), 2756-2757, 2011 | 128 | 2011 |
| Strand-specific RNA-seq analyses of fruiting body development in Coprinopsis cinerea H Muraguchi, K Umezawa, M Niikura, M Yoshida, T Kozaki, K Ishii, ... PloS one 10 (10), e0141586, 2015 | 113 | 2015 |
| iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria S Roux, AP Camargo, FH Coutinho, SM Dabdoub, BE Dutilh, S Nayfach, ... PLoS biology 21 (4), e3002083, 2023 | 107 | 2023 |
| Genomic analysis enlightens Agaricales lifestyle evolution and increasing peroxidase diversity FJ Ruiz-Dueñas, JM Barrasa, M Sánchez-García, S Camarero, ... Molecular biology and evolution 38 (4), 1428-1446, 2021 | 81 | 2021 |
| The Neurodata Without Borders ecosystem for neurophysiological data science O Rübel, A Tritt, R Ly, BK Dichter, S Ghosh, L Niu, P Baker, I Soltesz, L Ng, ... Elife 11, e78362, 2022 | 74 | 2022 |
| NWB: N 2.0: an accessible data standard for neurophysiology O Rübel, A Tritt, B Dichter, T Braun, N Cain, N Clack, TJ Davidson, ... BioRxiv, 523035, 2019 | 54 | 2019 |
| Extreme scale de novo metagenome assembly E Georganas, R Egan, S Hofmeyr, E Goltsman, B Arndt, A Tritt, A Buluç, ... SC18: International Conference for High Performance Computing, Networking …, 2018 | 46 | 2018 |
| chipD: a web tool to design oligonucleotide probes for high-density tiling arrays YS Dufour, GE Wesenberg, AJ Tritt, JD Glasner, NT Perna, JC Mitchell, ... Nucleic acids research 38 (suppl_2), W321-W325, 2010 | 37 | 2010 |
| Diploid-dominant life cycles characterize the early evolution of Fungi KR Amses, DR Simmons, JE Longcore, SJ Mondo, K Seto, GH Jerônimo, ... Proceedings of the National Academy of Sciences 119 (36), e2116841119, 2022 | 36 | 2022 |
| Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi B Looney, S Miyauchi, E Morin, E Drula, PE Courty, A Kohler, A Kuo, ... New Phytologist 233 (5), 2294-2309, 2022 | 29 | 2022 |
| Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the … AB Mujic, A Kuo, A Tritt, A Lipzen, C Chen, J Johnson, A Sharma, K Barry, ... G3: Genes, Genomes, Genetics 7 (6), 1775-1789, 2017 | 25 | 2017 |
| The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune IM Marian, PJ Vonk, ID Valdes, K Barry, B Bostock, A Carver, C Daum, ... mbio 13 (3), e00628-22, 2022 | 15 | 2022 |
| iPHoP: an integrated machine-learning framework to maximize host prediction for metagenome-assembled virus genomes S Roux, AP Camargo, FH Coutinho, SM Dabdoub, BE Dutilh, S Nayfach, ... bioRxiv, 2022.07. 28.501908, 2022 | 13 | 2022 |
