Daniel Faria

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Catia PesquitaLASIGE, Informática, Faculdade de Ciências, Universidade de Lisboa, PortugalVerified email at xldb.di.fc.ul.pt
Francisco M CoutoLASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa, PortugalVerified email at campus.ul.pt
Isabel F. CruzUniversity of Illinois at ChicagoVerified email at uic.edu
Andre O FalcaoProfessor of Computer Science, Univ. Lisboa, Faculdade de Ciências - Dept de Informática - BioISIVerified email at di.fc.ul.pt
Emanuel SantosInvited Assistant Professor, Faculty of Sciences, University of LisbonVerified email at di.fc.ul.pt
Ernesto Jimenez-RuizSenior Lecturer in Artificial Intelligence. City St George's, University of London, UKVerified email at city.ac.uk
Patrick LambrixLinköping University, SwedenVerified email at liu.se
Hugo P. BastosPost-Doc Research Associate, University of CambridgeVerified email at cam.ac.uk
Alfio FerraraDipartimento di Informatica, Università degli Studi di MilanoVerified email at unimi.it
Zlatan DragisicSectraVerified email at sectra.com
Ondrej Svab-ZamazalPrague University of Economics and BusinessVerified email at vse.cz
Valentina IvanovaRISE Research Institutes of SwedenVerified email at ri.se
Irini FundulakiPrincipal Researcher, Institute of Computer Science, FORTHVerified email at ics.forth.gr
Stefano MontanelliAssociate professor, Università degli Studi di MilanoVerified email at unimi.it
Michelle CheathamAssistant Professor, Wright State UniversityVerified email at wright.edu
Tzanina SavetaResearch and Development Engineer at ICS-FORTHVerified email at ics.forth.gr
Huanyu LiAssistant Professor, Linköping UniversityVerified email at liu.se
Booma Sowkarthiga BalasubramaniUniversity of Illinois at ChicagoVerified email at uic.edu
Ian HarrowIan Harrow ConsultingVerified email at pistoiaalliance.org
Jérôme EuzenatINRIA & Univ. Grenoble AlpesVerified email at inria.fr

Daniel Faria

INESC-ID, Instituto Superior Técnico, Universidade de Lisboa

Verified email at tecnico.ulisboa.pt

Bioinformatics Data Management Knowledge Engineering Semantic Web


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Semantic similarity in biomedical ontologies C Pesquita, D Faria, AO Falcao, P Lord, FM Couto PLoS computational biology 5 (7), e1000443, 2009	963	2009
Dynamic modularity in protein interaction networks predicts breast cancer outcome IW Taylor, R Linding, D Warde-Farley, Y Liu, C Pesquita, D Faria, S Bull, ... Nature biotechnology 27 (2), 199-204, 2009	870	2009
Metrics for GO based protein semantic similarity: a systematic evaluation C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto BMC bioinformatics 9, 1-16, 2008	434	2008
The AgreementMakerLight ontology matching system D Faria, C Pesquita, E Santos, M Palmonari, IF Cruz, FM Couto OTM Confederated International Conferences, 527-541, 2013	411	2013
Evaluating GO-based semantic similarity measures C Pesquita, D Faria, H Bastos, A Falcao, F Couto Proc. 10th Annual Bio-Ontologies Meeting 37 (40), 38, 2007	155	2007
User validation in ontology alignment Z Dragisic, V Ivanova, P Lambrix, D Faria, E Jiménez-Ruiz, C Pesquita The Semantic Web–ISWC 2016: 15th International Semantic Web Conference, Kobe …, 2016	119	2016
Enabling reusability of plant phenomic datasets with MIAPPE 1.1 EA Papoutsoglou, D Faria, D Arend, E Arnaud, IN Athanasiadis, I Chaves, ... New Phytologist 227 (1), 260-273, 2020	117	2020
Results of the ontology alignment evaluation initiative 2014 Z Dragisic, K Eckert, J Euzenat, D Faria, A Ferrara, R Granada, V Ivanova, ... 9th ISWC workshop on ontology matching (OM) 1317, 61-104, 2014	111	2014
Ontology alignment repair through modularization and confidence-based heuristics E Santos, D Faria, C Pesquita, FM Couto PloS one 10 (12), e0144807, 2015	100	2015
Results of the ontology alignment evaluation initiative 2016 M Achichi, M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, ... OM: Ontology matching, 73-129, 2016	86	2016
Results of the ontology alignment evaluation initiative 2015 M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, G Flouris, ... 10th ISWC workshop on ontology matching (OM), 60-115, 2015	85	2015
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments C Pesquita, D Faria, E Santos, FM Couto Proc. 8th ISWC ontology matching workshop (OM), Sydney (AU), page this volume 3, 2013	85	2013
AgreementMakerLight Results for OAEI 2014 D Faria, C Martins, A Nanavaty, A Taheri, C Pesquita, E Santos, IF Cruz, ... Ontology Matching Workshop, 105-112, 2014	77	2014
AgreementMakerLight Results for OAEI 2013 D Faria, C Pesquita, E Santos, IF Cruz, FM Couto Ontology Matching Workshop 1111, 101-108, 2013	77	2013
CESSM: collaborative evaluation of semantic similarity measures C Pesquita, D Pessoa, D Faria, F Couto JB2009: challenges in bioinformatics 157, 190, 2009	77	2009
Results of the ontology alignment evaluation initiative 2020 MAN Pour, A Algergawy, R Amini, D Faria, I Fundulaki, I Harrow, ... 15th International Workshop on Ontology Matching (OM 2020) 2788, 92-138, 2020	72	2020
Results of the ontology alignment evaluation initiative 2018 A Algergawy, M Cheatham, D Faria, A Ferrara, I Fundulaki, I Harrow, ... 13th International Workshop on Ontology Matching co-located with the 17th …, 2018	63	2018
Tackling the challenges of matching biomedical ontologies D Faria, C Pesquita, I Mott, C Martins, FM Couto, IF Cruz Journal of biomedical semantics 9, 1-19, 2018	62	2018
Results of the ontology alignment evaluation initiative 2017? M Achichi, M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, ... CEUR Workshop Proceedings 2032, 61-113, 2017	59	2017
Automatic background knowledge selection for matching biomedical ontologies D Faria, C Pesquita, E Santos, IF Cruz, FM Couto PloS one 9 (11), e111226, 2014	57	2014

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