| Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures R Kolodny, P Koehl, M Levitt Journal of molecular biology 346 (4), 1173-1188, 2005 | 344 | 2005 |
| Small libraries of protein fragments model native protein structures accurately R Kolodny, P Koehl, L Guibas, M Levitt Journal of molecular biology 323 (2), 297-307, 2002 | 248 | 2002 |
| Protein structure comparison: implications for the nature of ‘fold space’, and structure and function prediction R Kolodny, D Petrey, B Honig Current opinion in structural biology 16 (3), 393-398, 2006 | 177 | 2006 |
| Approximate protein structural alignment in polynomial time R Kolodny, N Linial Proceedings of the National Academy of Sciences 101 (33), 12201-12206, 2004 | 150 | 2004 |
| Sequence‐similar, structure‐dissimilar protein pairs in the PDB M Kosloff, R Kolodny Proteins: Structure, Function, and Bioinformatics 71 (2), 891-902, 2008 | 120 | 2008 |
| FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately I Budowski-Tal, Y Nov, R Kolodny Proceedings of the National Academy of Sciences 107 (8), 3481-3486, 2010 | 113 | 2010 |
| Inverse kinematics in biology: the protein loop closure problem R Kolodny, L Guibas, M Levitt, P Koehl The International Journal of Robotics Research 24 (2-3), 151-163, 2005 | 103 | 2005 |
| On the universe of protein folds R Kolodny, L Pereyaslavets, AO Samson, M Levitt Annual review of biophysics 42, 559-582, 2013 | 60 | 2013 |
| Maps of protein structure space reveal a fundamental relationship between protein structure and function M Osadchy, R Kolodny Proceedings of the National Academy of Sciences 108 (30), 12301-12306, 2011 | 58 | 2011 |
| Using an alignment of fragment strings for comparing protein structures I Friedberg, T Harder, R Kolodny, E Sitbon, Z Li, A Godzik Bioinformatics 23 (2), e219-e224, 2007 | 54 | 2007 |
| Global view of the protein universe S Nepomnyachiy, N Ben-Tal, R Kolodny Proceedings of the National Academy of Sciences 111 (32), 11691-11696, 2014 | 52 | 2014 |
| Protein decoy assembly using short fragments under geometric constraints R Kolodny, M Levitt Biopolymers: Original Research on Biomolecules 68 (3), 278-285, 2003 | 38 | 2003 |
| Potential Antigenic Cross-reactivity Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Dengue Viruses Y Lustig, S Keler, R Kolodny, N Ben-Tal, D Atias-Varon, E Shlush, ... Clinical Infectious Diseases, 2020 | 29 | 2020 |
| Complex evolutionary footprints revealed in an analysis of reused protein segments of diverse lengths S Nepomnyachiy, N Ben-Tal, R Kolodny Proceedings of the National Academy of Sciences 114 (44), 11703-11708, 2017 | 29 | 2017 |
| Faster algorithms for optimal multiple sequence alignment based on pairwise comparisons Y Bilu, PK Agarwal, R Kolodny IEEE/ACM Transactions on Computational Biology and Bioinformatics 3 (4), 408-422, 2006 | 27 | 2006 |
| CyToStruct: augmenting the network visualization of cytoscape with the power of molecular viewers S Nepomnyachiy, N Ben-Tal, R Kolodny Structure 23 (5), 941-948, 2015 | 18 | 2015 |
| Evolutionary pathways of repeat protein topology in bacterial outer membrane proteins MW Franklin, S Nepomnyachyi, R Feehan, N Ben-Tal, R Kolodny, ... Elife 7, e40308, 2018 | 16 | 2018 |
| Representation of the protein universe using classifications, maps, and networks N Ben‐Tal, R Kolodny Israel Journal of Chemistry 54 (8‐9), 1286-1292, 2014 | 11 | 2014 |
| Efflux pumps represent possible evolutionary convergence onto the β-Barrel fold MW Franklin, S Nepomnyachiy, R Feehan, N Ben-Tal, R Kolodny, ... Structure 26 (9), 1266-1274. e2, 2018 | 10 | 2018 |
| ConTemplate suggests possible alternative conformations for a query protein of known structure A Narunsky, S Nepomnyachiy, H Ashkenazy, R Kolodny, N Ben-Tal Structure 23 (11), 2162-2170, 2015 | 9 | 2015 |
Nir Ben-TalProfessor of Biochemistry and Molecular Biology, The George S. Wise Faculty of Life Sciences, TelVerified email at ashtoret.tau.ac.il
