| MUSCLE: multiple sequence alignment with high accuracy and high throughput RC Edgar Nucleic acids research 32 (5), 1792-1797, 2004 | 48667 | 2004 |
| Search and clustering orders of magnitude faster than BLAST RC Edgar Bioinformatics 26 (19), 2460-2461, 2010 | 21831 | 2010 |
| UPARSE: highly accurate OTU sequences from microbial amplicon reads RC Edgar Nature methods 10 (10), 996-998, 2013 | 15611 | 2013 |
| UCHIME improves sensitivity and speed of chimera detection RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight Bioinformatics 27 (16), 2194-2200, 2011 | 14988 | 2011 |
| Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 11059 | 2012 |
| MUSCLE: a multiple sequence alignment method with reduced time and space complexity RC Edgar BMC bioinformatics 5, 1-19, 2004 | 9853 | 2004 |
| Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86-90, 2012 | 2933 | 2012 |
| A framework for human microbiome research Nature 486 (7402), 215-221, 2012 | 1784 | 2012 |
| UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing RC Edgar BioRxiv, 081257, 2016 | 1572 | 2016 |
| Error filtering, pair assembly and error correction for next-generation sequencing reads RC Edgar, H Flyvbjerg Bioinformatics 31 (21), 3476-3482, 2015 | 1253 | 2015 |
| The genome sequence of taurine cattle: a window to ruminant biology and evolution Bovine Genome Sequencing and Analysis Consortium, CG Elsik, ... Science 324 (5926), 522-528, 2009 | 1165 | 2009 |
| Genome sequence, comparative analysis, and population genetics of the domestic horse CM Wade, E Giulotto, S Sigurdsson, M Zoli, S Gnerre, F Imsland, TL Lear, ... Science 326 (5954), 865-867, 2009 | 934 | 2009 |
| SINTAX: a simple non-Bayesian taxonomy classifier for 16S and ITS sequences RC Edgar biorxiv, 074161, 2016 | 827 | 2016 |
| A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... nature 486 (7402), 215, 2012 | 742 | 2012 |
| Multiple sequence alignment RC Edgar, S Batzoglou Current opinion in structural biology 16 (3), 368-373, 2006 | 716 | 2006 |
| Updating the 97% identity threshold for 16S ribosomal RNA OTUs RC Edgar Bioinformatics 34 (14), 2371-2375, 2018 | 701 | 2018 |
| Structure, function and diversity of the healthy human microbiome HMP Consortium nature 486 (7402), 207-214, 2012 | 701 | 2012 |
| PILER: identification and classification of genomic repeats RC Edgar, EW Myers Bioinformatics-Oxford 21 (1), i152, 2005 | 681 | 2005 |
| Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny RC Edgar Nature Communications 13 (1), 6968, 2022 | 430 | 2022 |
| PILER-CR: fast and accurate identification of CRISPR repeats RC Edgar BMC bioinformatics 8, 1-6, 2007 | 423 | 2007 |
