CATH: comprehensive structural and functional annotations for genome sequences I Sillitoe, TE Lewis, A Cuff, S Das, P Ashford, NL Dawson, N Furnham, ... Nucleic acids research 43 (D1), D376-D381, 2015 | 490 | 2015 |
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D DAndrea, R Lepore, ... Genome biology 17, 1-19, 2016 | 424 | 2016 |
CATH: an expanded resource to predict protein function through structure and sequence NL Dawson, TE Lewis, S Das, JG Lees, D Lee, P Ashford, CA Orengo, ... Nucleic acids research 45 (D1), D289-D295, 2017 | 399 | 2017 |
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 384 | 2019 |
CATH: expanding the horizons of structure-based functional annotations for genome sequences I Sillitoe, N Dawson, TE Lewis, S Das, JG Lees, P Ashford, A Tolulope, ... Nucleic acids research 47 (D1), D280-D284, 2019 | 145 | 2019 |
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation S Das, D Lee, I Sillitoe, NL Dawson, JG Lees, CA Orengo Bioinformatics 31 (21), 3460-3467, 2015 | 123 | 2015 |
Emerging concepts in pseudoenzyme classification, evolution, and signaling AJM Ribeiro, S Das, N Dawson, R Zaru, S Orchard, JM Thornton, ... Science Signaling 12 (594), eaat9797, 2019 | 89 | 2019 |
Gene3D: expanding the utility of domain assignments SD Lam, NL Dawson, S Das, I Sillitoe, P Ashford, D Lee, S Lehtinen, ... Nucleic acids research 44 (D1), D404-D409, 2016 | 82 | 2016 |
PDBe-KB: a community-driven resource for structural and functional annotations M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ... Nucleic Acids Research 48 (D1), D344-D353, 2020 | 76 | 2020 |
Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells Y Tsuchiya, A Zhyvoloup, J Baković, N Thomas, BYK Yu, S Das, C Orengo, ... Biochemical Journal 475 (11), 1909-1937, 2018 | 74 | 2018 |
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis JG Lees, D Lee, RA Studer, NL Dawson, I Sillitoe, S Das, C Yeats, ... Nucleic acids research 42 (D1), D240-D245, 2014 | 66 | 2014 |
An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences SD Lam, S Das, I Sillitoe, C Orengo Acta Crystallographica Section D: Structural Biology 73 (8), 628-640, 2017 | 63 | 2017 |
CATH FunFHMMer web server: protein functional annotations using functional family assignments S Das, I Sillitoe, D Lee, JG Lees, NL Dawson, J Ward, CA Orengo Nucleic acids research 43 (W1), W148-W153, 2015 | 54 | 2015 |
Protein function annotation using protein domain family resources S Das, CA Orengo Methods 93, 24-34, 2016 | 46 | 2016 |
Diversity in protein domain superfamilies S Das, NL Dawson, CA Orengo Current opinion in genetics & development 35, 40-49, 2015 | 45 | 2015 |
Novel computational protocols for functionally classifying and characterising serine beta-lactamases D Lee, S Das, NL Dawson, D Dobrijevic, J Ward, C Orengo PLoS Computational Biology 12 (6), e1004926, 2016 | 38 | 2016 |
The chemical formula of a magnetotactic bacterium M Naresh, S Das, P Mishra, A Mittal Biotechnology and bioengineering, 2012 | 37 | 2012 |
CATH functional families predict functional sites in proteins S Das, HM Scholes, N Sen, C Orengo Bioinformatics 37 (8), 1099-1106, 2021 | 24 | 2021 |
Analysis of genetic host response risk factors in severe COVID-19 patients K Taylor, S Das, M Pearson, J Kozubek, M Pawlowski, CE Jensen, ... medRxiv, 2020.06. 17.20134015, 2020 | 19 | 2020 |
Profiling the site of protein CoAlation and coenzyme A stabilization interactions MA Tossounian, M Baczynska, W Dalton, C Newell, Y Ma, S Das, ... Antioxidants 11 (7), 1362, 2022 | 15 | 2022 |