| LIVECell—A large-scale dataset for label-free live cell segmentation C Edlund, TR Jackson, N Khalid, N Bevan, T Dale, A Dengel, S Ahmed, ... Nature methods 18 (9), 1038-1045, 2021 | 207 | 2021 |
| Segment anything for microscopy A Archit, S Nair, N Khalid, P Hilt, V Rajashekar, M Freitag, S Gupta, ... bioRxiv, 2023.08. 21.554208, 2023 | 29 | 2023 |
| Increased levels of mitochondrial import factor Mia40 prevent the aggregation of polyQ proteins in the cytosol AM Schlagowski, K Knöringer, S Morlot, A Sánchez Vicente, T Flohr, ... The EMBO Journal 40 (16), e107913, 2021 | 22 | 2021 |
| Deepcens: An end-to-end pipeline for cell and nucleus segmentation in microscopic images N Khalid, M Munir, C Edlund, TR Jackson, J Trygg, R Sjögren, A Dengel, ... 2021 International Joint Conference on Neural Networks (IJCNN), 1-8, 2021 | 14 | 2021 |
| Point2mask: a weakly supervised approach for cell segmentation using point annotation N Khalid, F Schmeisser, M Koochali, M Munir, C Edlund, TR Jackson, ... Annual Conference on Medical Image Understanding and Analysis, 139-153, 2022 | 11 | 2022 |
| Deepcis: An end-to-end pipeline for cell-type aware instance segmentation in microscopic images N Khalid, M Munir, C Edlund, TR Jackson, J Trygg, R Sjögren, A Dengel, ... 2021 IEEE EMBS International Conference on Biomedical and Health Informatics …, 2021 | 9 | 2021 |
| PACE: Point Annotation-Based Cell Segmentation for Efficient Microscopic Image Analysis N Khalid, TC Froes, M Caroprese, G Lovell, J Trygg, A Dengel, S Ahmed International Conference on Artificial Neural Networks, 545-557, 2023 | 8 | 2023 |
| Segment anything for microscopy. bioRxiv A Archit, S Nair, N Khalid, P Hilt, V Rajashekar, M Freitag, S Gupta, ... 2023a, 2023 | 7 | 2023 |
| DeepMuCS: a framework for co-culture microscopic image analysis: from generation to segmentation N Khalid, M Koochali, V Rajashekar, M Munir, C Edlund, TR Jackson, ... 2022 IEEE-EMBS International Conference on Biomedical and Health Informatics …, 2022 | 4 | 2022 |
| DeepMuCS: A Framework for Mono-& Co-culture Microscopic Image Analysis: From Generation to Segmentation N Khalid, M Koochali, V Rajashekhar, M Munir, C Edlund, T Jackson, ... Authorea Preprints, 2023 | 1 | 2023 |
| CellSpot: Deep Learning-Based Efficient Cell Center Detection in Microscopic Images N Khalid, M Caroprese, G Lovell, J Trygg, A Dengel, S Ahmed International Conference on Artificial Neural Networks, 215-229, 2024 | | 2024 |
| Bounding Box Is All You Need: Learning to Segment Cells in 2D Microscopic Images via Box Annotations N Khalid, M Caroprese, G Lovell, DA Porto, J Trygg, A Dengel, S Ahmed Annual Conference on Medical Image Understanding and Analysis, 314-328, 2024 | | 2024 |
| CellGenie: An End-to-End Pipeline for Synthetic Cellular Data Generation and Segmentation: A Use Case for Cell Segmentation in Microscopic Images N Khalid, M Koochali, DNL Leon, M Caroprese, G Lovell, DA Porto, ... Annual Conference on Medical Image Understanding and Analysis, 387-401, 2024 | | 2024 |
| LIVECell---A large-scale dataset for label-free live cell segmentation N Khalid Authorea Preprints, 2023 | | 2023 |
