Hongfang Liu
Hongfang Liu
Professor of Biomedical Informatics, Mayo Clinic
Verified email at mayo.edu
Cited by
Cited by
Overview of BioCreative II gene normalization
AA Morgan, Z Lu, X Wang, AM Cohen, J Fluck, P Ruch, A Divoli, K Fundel, ...
Genome biology 9 (S2), S3, 2008
CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set
WC Reinhold, M Sunshine, H Liu, S Varma, KW Kohn, J Morris, ...
Cancer research 72 (14), 3499-3511, 2012
Overview of BioCreative II gene mention recognition
L Smith, LK Tanabe, RJ nee Ando, CJ Kuo, IF Chung, CN Hsu, YS Lin, ...
Genome biology 9 (S2), S2, 2008
Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the Clavicipitaceae reveals dynamics of alkaloid loci
CL Schardl, CA Young, U Hesse, SG Amyotte, K Andreeva, PJ Calie, ...
PLoS Genet 9 (2), e1003323, 2013
Clinical information extraction applications: a literature review
Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ...
Journal of biomedical informatics 77, 34-49, 2018
UTS: An unbalanced tree search benchmark
S Olivier, J Huan, J Liu, J Prins, J Dinan, P Sadayappan, CW Tseng
International Workshop on Languages and Compilers for Parallel Computing …, 2006
Building effective defect-prediction models in practice
AG Koru, H Liu
IEEE software 22 (6), 23-29, 2005
Gene name ambiguity of eukaryotic nomenclatures
L Chen, H Liu, C Friedman
Bioinformatics 21 (2), 248-256, 2005
Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS
H Liu, SB Johnson, C Friedman
Journal of the American Medical Informatics Association 9 (6), 621-636, 2002
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality
H Xu, MC Aldrich, Q Chen, H Liu, NB Peterson, Q Dai, M Levy, A Shah, ...
Journal of the American Medical Informatics Association 22 (1), 179-191, 2015
Representing information in patient reports using natural language processing and the extensible markup language
C Friedman, G Hripcsak, L Shagina, H Liu
Journal of the American Medical Informatics Association 6 (1), 76-87, 1999
The gene normalization task in BioCreative III
Z Lu, HY Kao, CH Wei, M Huang, J Liu, CJ Kuo, CN Hsu, RTH Tsai, ...
BMC bioinformatics 12 (S8), S2, 2011
Framework for a protein ontology
DA Natale, CN Arighi, WC Barker, J Blake, TC Chang, Z Hu, H Liu, ...
BMC bioinformatics 8 (S9), S1, 2007
An investigation into the functional form of the size-defect relationship for software modules
AG Koru, D Zhang, K El Emam, H Liu
IEEE Transactions on Software Engineering 35 (2), 293-304, 2008
BioThesaurus: a web-based thesaurus of protein and gene names
H Liu, ZZ Hu, J Zhang, C Wu
Bioinformatics 22 (1), 103-105, 2006
mRNA and microRNA expression profiles of the NCI-60 integrated with drug activities
H Liu, P D'Andrade, S Fulmer-Smentek, P Lorenzi, KW Kohn, ...
Molecular cancer therapeutics 9 (5), 1080-1091, 2010
The CHEMDNER corpus of chemicals and drugs and its annotation principles
M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ...
Journal of cheminformatics 7 (1), 1-17, 2015
A comparison of word embeddings for the biomedical natural language processing
Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ...
Journal of biomedical informatics 87, 12-20, 2018
Biological nomenclatures: a source of lexical knowledge and ambiguity
O Tuason, L Chen, H Liu, JA Blake, C Friedman
Biocomputing 2004, 238-249, 2003
Disambiguating ambiguous biomedical terms in biomedical narrative text: an unsupervised method
H Liu, YA Lussier, C Friedman
Journal of biomedical informatics 34 (4), 249-261, 2001
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